About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37732UNCHARACTERIZED
Paelopatides37733-
Paelopatides37734CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN
Paelopatides37735SHC TRANSFORMING PROTEIN
Paelopatides37736WAP FOUR-DISULFIDE CORE DOMAIN PROTEIN 1
Paelopatides37737DNA HELICASE RECQ FAMILY MEMBER
Paelopatides37738MULTICOPPER OXIDASE-RELATED
Paelopatides37739-
Paelopatides37740INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS
Paelopatides37741KICSTOR COMPLEX PROTEIN SZT2
Paelopatides37742G PATCH DOMAIN-CONTAINING PROTEIN 1
Paelopatides37743SI:CH211-175M2.5
Paelopatides37744SARCOMA ANTIGEN NY-SAR-23
Paelopatides37745COILED-COIL DOMAIN-CONTAINING PROTEIN 125
Paelopatides37746CONDENSIN COMPLEX SUBUNIT 3-RELATED
Paelopatides37747CONDENSIN COMPLEX SUBUNIT 3-RELATED
Paelopatides37748CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 99
Paelopatides37749PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides37750COMPLEXIN
Paelopatides37751PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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