About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40627-
Paelopatides40628-
Paelopatides40629UNC80
Paelopatides40630UNC80
Paelopatides40631REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40632GLUTATHIONE REDUCTASE
Paelopatides40633PEPTIDASE
Paelopatides40634PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides40635RETROTRANSPOSON
Paelopatides40636TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 3
Paelopatides40637KELCH PROTEIN
Paelopatides40638NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B
Paelopatides40639ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides40640-
Paelopatides40641REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40642DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides40643SWAP-70 RECOMBINASE
Paelopatides40644-
Paelopatides40645-
Paelopatides40646DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2
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