About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40502-
Paelopatides40503REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40504NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides40505NETRIN RECEPTOR UNC5
Paelopatides40506RETROTRANSPOSON
Paelopatides40507CYCLIN
Paelopatides40508ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED
Paelopatides40509PROTEIN CBG26694
Paelopatides40510COILED-COIL DOMAIN-CONTAINING 166
Paelopatides40511SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
Paelopatides40512RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Paelopatides40513RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Paelopatides40514DULLARD PROTEIN PHOSPHATASE
Paelopatides40515-
Paelopatides40516RGD1561648
Paelopatides40517LYMPHOID-SPECIFIC HELICASE
Paelopatides40518COILED-COIL ALPHA-HELICAL ROD PROTEIN 1
Paelopatides40519ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40520RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides40523-
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