About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41042-
Paelopatides41043PROTEIN PHOSPHATASE 2C
Paelopatides41044WD40 REPEAT PROTEIN SWD2
Paelopatides41045GLYCERATE KINASE
Paelopatides41046-
Paelopatides41047-
Paelopatides41048UNCHARACTERIZED
Paelopatides41049FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41050FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41051SERINE-THREONINE PROTEIN KINASE
Paelopatides41052FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41053CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides41054VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
Paelopatides41055REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41056-
Paelopatides41057REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41058-
Paelopatides41059PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides41060OVARIAN CARCINOMA ANTIGEN CA125-RELATED
Paelopatides41061CS DOMAIN-CONTAINING PROTEIN
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