About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41062CS DOMAIN-CONTAINING PROTEIN
Paelopatides41063PROTEASE M1 ZINC METALLOPROTEASE
Paelopatides41064-
Paelopatides41065-
Paelopatides41066-
Paelopatides41067-
Paelopatides41068HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
Paelopatides41069-
Paelopatides41071DNAJ HOMOLOG SUBFAMILY B MEMBER 11
Paelopatides41072-
Paelopatides41073-
Paelopatides41074STEROL ISOMERASE
Paelopatides41075DUAL SPECIFICITY PROTEIN PHOSPHATASE
Paelopatides41076REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41077UBX DOMAIN-CONTAINING PROTEIN 4
Paelopatides41078PHOSPHORYN, PUTATIVE-RELATED-RELATED
Paelopatides41079-
Paelopatides41080NEUROLIGIN
Paelopatides41081CARBOXYLESTERASE
Paelopatides41082COATOMER SUBUNIT GAMMA
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