About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41126REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41127-
Paelopatides41128PROTEIN CBG26694
Paelopatides41129WSCD FAMILY MEMBER CG9164
Paelopatides411303'-5' EXONUCLEASE ERI1-RELATED
Paelopatides41131REVERSE TRANSCRIPTASES
Paelopatides41132FRIEND OF GATA2-RELATED
Paelopatides41133FRIEND OF GATA2-RELATED
Paelopatides41134EXPRESSED PROTEIN
Paelopatides41135-
Paelopatides41136VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 62-RELATED
Paelopatides41137ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides41138-
Paelopatides41139LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
Paelopatides41140REVERSE TRANSCRIPTASES
Paelopatides41141POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides41142FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41144PROTEIN EVA-1
Paelopatides41145-
Paelopatides41146DUF3504 DOMAIN-CONTAINING PROTEIN
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