About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41701FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41702CHROMOBOX PROTEIN
Paelopatides41703-
Paelopatides41704FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41705FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41708COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides41709BONUS, ISOFORM C-RELATED
Paelopatides41710MYO-INOSITOL-1 PHOSPHATE SYNTHASE
Paelopatides41711MYO-INOSITOL-1 PHOSPHATE SYNTHASE
Paelopatides41712REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41713MYO-INOSITOL-1 PHOSPHATE SYNTHASE
Paelopatides41714NETRIN RECEPTOR UNC5
Paelopatides41715NETRIN RECEPTOR UNC5
Paelopatides41716-
Paelopatides41717SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides41718REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41719-
Paelopatides41720NG5
Paelopatides41721-
Paelopatides41722REVERSE TRANSCRIPTASES
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