About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41574-
Paelopatides41575-
Paelopatides41576AGAP005574-PA
Paelopatides41577ZINC FINGER PROTEIN
Paelopatides41578AGAP005574-PA
Paelopatides41579N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1
Paelopatides41580PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides41581REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41582ZINC FINGER PROTEIN
Paelopatides41583NADH-UBIQUINONE OXIDOREDUCTASE B12 SUBUNIT
Paelopatides41584-
Paelopatides41585PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides41586NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides41587-
Paelopatides41588-
Paelopatides41589ENDONUCLEASE-RELATED
Paelopatides41590POL PROTEIN
Paelopatides41591REVERSE TRANSCRIPTASES
Paelopatides41592REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41593-
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