About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43532GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Paelopatides43533PROTEIN CBG26694
Paelopatides43534ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43535INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides43536INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides43537INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides43538-
Paelopatides43539NETRIN RECEPTOR UNC5
Paelopatides43540-
Paelopatides43541TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
Paelopatides43542RAD9, HUS1, RAD1-INTERACTING NUCLEAR ORPHAN PROTEIN 1
Paelopatides43543REVERSE TRANSCRIPTASES
Paelopatides43544FORKHEAD BOX PROTEIN J2 FAMILY MEMBER
Paelopatides43545TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED
Paelopatides43547AGAP001464-PB
Paelopatides43548MIXED LINEAGE PROTEIN KINASE
Paelopatides43549RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT
Paelopatides43550AQUAPORIN OR AQUAGLYCEROPORIN RELATED
Paelopatides43551TRANSPOSASE, PUTATIVE-RELATED
Paelopatides43552INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
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