About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43593OS08G0560600 PROTEIN
Paelopatides43594VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 62-RELATED
Paelopatides43595CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43598-
Paelopatides43599-
Paelopatides43600MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides43601RING FINGER PROTEIN 31-RELATED
Paelopatides43602HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides43603GOLGI MEMBRANE PROTEIN YIP1
Paelopatides43604REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43605ENDONUCLEASE
Paelopatides43606FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43607PROTEIN, PUTATIVE-RELATED
Paelopatides43608FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides43609SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides43610-
Paelopatides43611SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides43612PROTEIN CBG26694
Paelopatides43613PROTEIN CBG26694
Paelopatides43614TUMOR ENDOTHELIAL MARKER 7 RELATED
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