About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides4592430S RIBOSOMAL PROTEIN S12 FAMILY MEMBER
Paelopatides45925-
Paelopatides45926-
Paelopatides45927PROTEIN FAM181B
Paelopatides45928-
Paelopatides45929-
Paelopatides45930PROTEASE U48 CAAX PRENYL PROTEASE RCE1
Paelopatides45931TRANSMEMBRANE PROTEIN
Paelopatides45932ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45933REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides459343-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
Paelopatides45935SELENOPROTEIN W
Paelopatides45936-
Paelopatides45937RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides45938UNCHARACTERIZED
Paelopatides45939FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45940SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45941ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER
Paelopatides45942-
Paelopatides45943METALLOPROTEASE M41 FTSH
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