About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45882CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45883REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45884CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45885CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45886DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides45887-
Paelopatides45888LITHOSTATHINE
Paelopatides45889DDB1- AND CUL4-ASSOCIATED FACTOR 15
Paelopatides4589052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides45891-
Paelopatides45893CYCLIN
Paelopatides45894REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45895-
Paelopatides45896-
Paelopatides45897-
Paelopatides45898-
Paelopatides45900-
Paelopatides45901-
Paelopatides45902CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45903THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
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