About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45860UBIQUITIN-ACTIVATING ENZYME E1
Paelopatides45861DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Paelopatides45862-
Paelopatides45863-
Paelopatides45864NME/NM23 FAMILY MEMBER 8
Paelopatides45865LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides45866LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides45867FRIZZLED
Paelopatides45869-
Paelopatides45870-
Paelopatides45871CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45872MUCIN 4-RELATED
Paelopatides45873PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides45874REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45875REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45877REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45878FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides45879-
Paelopatides45880CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45881CYTOCHROME P450 FAMILY 46 SUBFAMILY A
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