About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45904-
Paelopatides45905UBX DOMAIN CONTAINING PROTEIN
Paelopatides45906-
Paelopatides45907ENDONUCLEASE-RELATED
Paelopatides45908WD REPEAT-CONTAINING PROTEIN 48
Paelopatides45909-
Paelopatides45910-
Paelopatides45911PROTEIN CBG26694
Paelopatides45912SYNDECAN
Paelopatides45913FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45914POL PROTEIN
Paelopatides45915CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides45916TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides45917FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45918-
Paelopatides45919PROTEIN CBG26694
Paelopatides45920-
Paelopatides45921-
Paelopatides45922KINETOCHORE SCAFFOLD 1
Paelopatides45923TESTIS-EXPRESSED PROTEIN 43
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