About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06004MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides06005MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides06006MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides06007-
Paelopatides06008PROTEIN PHOSPHATASE
Paelopatides06009REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06010EXPRESSED PROTEIN
Paelopatides06011PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06012-
Paelopatides06013-
Paelopatides06014EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
Paelopatides06015ABC TRANSPORTER G FAMILY MEMBER 28
Paelopatides06016ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06017ABC TRANSPORTER G FAMILY MEMBER 28
Paelopatides06018ABC TRANSPORTER G FAMILY MEMBER 28
Paelopatides06019ABC TRANSPORTER G FAMILY MEMBER 28
Paelopatides06020FTP DOMAIN-CONTAINING PROTEIN
Paelopatides06021-
Paelopatides06022-
Paelopatides06023HOMEOBOX PROTEIN NKX
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