About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06024-
Paelopatides06025NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A
Paelopatides06026-
Paelopatides06027-
Paelopatides06028-
Paelopatides06029KNIRPS-RELATED PROTEIN-RELATED
Paelopatides06030VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
Paelopatides06031PROTEIN CBG26694
Paelopatides06032PROTEIN CBG26694
Paelopatides06033ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06034-
Paelopatides06035CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06036-
Paelopatides06037FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides06038-
Paelopatides06039PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06040-
Paelopatides06041AP ENDONUCLEASE
Paelopatides06042-
Paelopatides06043ACETYLCHOLINESTERASE
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