About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07009-
Paelopatides07010ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07011ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07012CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides07013REVERSE TRANSCRIPTASE
Paelopatides07014OVOCHYMASE-RELATED
Paelopatides07015L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides07016GAG-RELATED PROTEIN
Paelopatides07017MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F
Paelopatides07018-
Paelopatides07019-
Paelopatides07020-
Paelopatides07021-
Paelopatides07022-
Paelopatides07023OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides07024PROTEIN CBG26694
Paelopatides07025POL PROTEIN
Paelopatides07026POL PROTEIN
Paelopatides07028PROTEIN, PUTATIVE-RELATED
Paelopatides07029-
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