About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06902ALPHA-MANNOSIDASE 2C1
Paelopatides06903ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06904-
Paelopatides06905-
Paelopatides06906-
Paelopatides06907L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides06908CGI-12 PROTEIN-RELATED
Paelopatides06909-
Paelopatides06910FORKHEAD BOX PROTEIN
Paelopatides06911TRANSPOSON
Paelopatides06912ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides069132-HYDROXYACID DEHYDROGENASE-RELATED
Paelopatides06914TRANSMEMBRANE PROTEASE SERINE
Paelopatides06915CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides06916-
Paelopatides06917-
Paelopatides06918PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06919TRANSPOSON
Paelopatides06920SYNAPTIC VESICLE GLYCOPROTEIN 2
Paelopatides06921-
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