About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07050PROTEIN CBG26694
Paelopatides07051RUBY-EYE2-LIKE PROTEIN
Paelopatides07052ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides07053ZINC FINGER PROTEIN 598
Paelopatides0705452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides07055SYNAPTOGYRIN
Paelopatides07056GTP-BINDING PROTEIN ALPHA SUBUNIT
Paelopatides070572-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2
Paelopatides07058-
Paelopatides07059REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07060TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides07061RETROTRANSPOSON
Paelopatides07062ABHYDROLASE DOMAIN-CONTAINING PROTEIN
Paelopatides07063RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides07064-
Paelopatides07065FIBRINOGEN ALPHA CHAIN
Paelopatides07066CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING
Paelopatides07067ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07068UNCHARACTERIZED
Paelopatides07069EPM2A-INTERACTING PROTEIN 1
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