About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06922-
Paelopatides06923CCAAT DISPLACEMENT PROTEIN-RELATED
Paelopatides06924CCAAT DISPLACEMENT PROTEIN-RELATED
Paelopatides06925PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides06926NUCLEOPORIN NUP84-RELATED
Paelopatides06927PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06928SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides06929SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides06930PROTEIN CBG26694
Paelopatides06931REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06932BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides06933-
Paelopatides06934T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides06935GTP-BINDING
Paelopatides06936-
Paelopatides06937-
Paelopatides06938ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06939ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides06940-
Paelopatides06941EPM2A-INTERACTING PROTEIN 1
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