About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides06967JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE
Paelopatides06968LD11652P
Paelopatides06969-
Paelopatides06970PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides06971REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides06972-
Paelopatides06973BUCENTAUR RELATED
Paelopatides06974-
Paelopatides06975-
Paelopatides06976HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides06977SIMILAR TO RIKEN CDNA 2310022B05
Paelopatides06978-
Paelopatides06979CYTOCHROME P450 FAMILY 1
Paelopatides06980CYTOCHROME P450 508A4-RELATED
Paelopatides06981EPOXIDE HYDROLASE 1-RELATED
Paelopatides06982PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Paelopatides06984TRANSMEMBRANE PROTEIN
Paelopatides06985FIBRINOGEN ALPHA CHAIN
Paelopatides06986-
Paelopatides06987-
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