About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07351ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18
Paelopatides07352ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18
Paelopatides07353CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL
Paelopatides07354UBIQUITIN-ACTIVATING ENZYME E1
Paelopatides07355UNCHARACTERIZED
Paelopatides07356PROTEIN ARGININE N-METHYLTRANSFERASE 5
Paelopatides07357SI:CH211-196P9.1-RELATED
Paelopatides07358INOSITOL POLYPHOSPHATE KINASE
Paelopatides07359-
Paelopatides07362REVERSE TRANSCRIPTASES
Paelopatides07363NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides07364-
Paelopatides07365PROTEIN CBG26694
Paelopatides07367PROTEIN CBG26694
Paelopatides07368ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07369-
Paelopatides07370OS05G0310600 PROTEIN
Paelopatides07371-
Paelopatides07372ENDORIBONUCLEASE YBEY, CHLOROPLASTIC
Paelopatides07373-
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