About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07268RAGULATOR COMPLEX PROTEIN LAMTOR5
Paelopatides07269-
Paelopatides07270N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
Paelopatides07271-
Paelopatides07272VACUOLAR MEMBRANE PROTEIN YPL162C
Paelopatides07273PROPERDIN
Paelopatides07274PROPERDIN
Paelopatides07275RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides07276ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07277PEPTIDASE
Paelopatides07278REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides07279RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides07280TRANSPOSABLE ELEMENT-RELATED
Paelopatides07281ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07282-
Paelopatides07283TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3
Paelopatides07284MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
Paelopatides07285CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07286CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides07287CXC DOMAIN-CONTAINING PROTEIN-RELATED
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