About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides07331PROTEIN CBG26694
Paelopatides07332-
Paelopatides07333RETROTRANSPOSON
Paelopatides07334-
Paelopatides07335IMPORTIN BETA
Paelopatides07336-
Paelopatides07337FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides07338-
Paelopatides07339PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides07340ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides07341-
Paelopatides07342-
Paelopatides07343POL PROTEIN
Paelopatides07344E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides07345TRANSPOSON
Paelopatides07346-
Paelopatides07347GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides07348PROTEIN CBG26694
Paelopatides07349BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides07350-
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