Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_13626-0.1 | |
| Bpl_scaf_1363-0.4 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| Bpl_scaf_1363-1.3 | |
| Bpl_scaf_1363-1.4 | GMP SYNTHASE-RELATED |
| Bpl_scaf_1363-5.20 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| Bpl_scaf_1363-5.29 | NUCLEOPORIN NUP188 HOMOLOG |
| Bpl_scaf_1363-5.31 | |
| Bpl_scaf_1363-7.3 | RAS GTPASE-ACTIVATING PROTEINS |
| Bpl_scaf_1363-8.8 | UNCHARACTERIZED |
| Bpl_scaf_13632-0.17 | PLEXIN |
| Bpl_scaf_13632-0.19 | |
| Bpl_scaf_13632-0.6 | |
| Bpl_scaf_13641-0.0 | |
| Bpl_scaf_13641-0.12 | |
| Bpl_scaf_13641-0.6 | |
| Bpl_scaf_13642-0.1 | |
| Bpl_scaf_13642-0.2 | UPF0462 PROTEIN |
| Bpl_scaf_13642-1.6 | |
| Bpl_scaf_13642-1.7 | GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN 1 |
| Bpl_scaf_13642-1.8 | OLIGOPHRENIN 1 |
| Bpl_scaf_13642-2.9 | OLIGOPHRENIN 1 |
| Bpl_scaf_13642-3.30 | CADHERIN-87A |
| Bpl_scaf_13642-3.4 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_13642-4.27 | DELTA(14)-STEROL REDUCTASE |
| Bpl_scaf_13642-4.5 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_13642-4.6 | DELTA(14)-STEROL REDUCTASE |
| Bpl_scaf_13642-5.7 | DELTA(14)-STEROL REDUCTASE |
| Bpl_scaf_13642-5.8 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_13642-6.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_13642-6.25 | DELTA(14)-STEROL REDUCTASE |
| Bpl_scaf_13642-6.28 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_13642-6.31 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_13642-6.40 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_13642-6.41 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_13642-6.5 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_1365-0.0 | BETA-MICROSEMINOPROTEIN |
| Bpl_scaf_1365-0.2 | BETA-MICROSEMINOPROTEIN |
| Bpl_scaf_1365-0.6 | TETRASPANIN |
| Bpl_scaf_13650-0.15 | |
| Bpl_scaf_13650-0.23 | SIDESTEP PROTEIN |
| Bpl_scaf_13650-0.24 | |
| Bpl_scaf_13650-0.26 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_13659-0.0 | |
| Bpl_scaf_13659-0.11 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_13659-0.12 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_13659-0.14 | |
| Bpl_scaf_13659-0.8 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_1366-0.12 | INTEGRATOR COMPLEX SUBUNIT 5 |
| Bpl_scaf_1366-0.15 | |
| Bpl_scaf_1366-0.6 | DIMETHYLARGININE DIMETHYLAMINOHYDROLASE |
