About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_1366-0.7
Bpl_scaf_1366-0.9
Bpl_scaf_13668-0.0
Bpl_scaf_13668-0.1
Bpl_scaf_13668-0.3
Bpl_scaf_13679-0.16
Bpl_scaf_13679-0.17SET DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_13679-0.2
Bpl_scaf_13679-0.3
Bpl_scaf_13679-0.9BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_1368-0.3NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
Bpl_scaf_13680-1.12NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_13680-1.13FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Bpl_scaf_13680-1.17ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Bpl_scaf_13680-1.18SACSIN
Bpl_scaf_13680-3.0
Bpl_scaf_13680-3.4
Bpl_scaf_13684-0.10TOLL-LIKE RECEPTOR
Bpl_scaf_13684-0.11SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Bpl_scaf_13684-0.13TOLL-LIKE RECEPTOR
Bpl_scaf_13684-0.19SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_13684-0.21
Bpl_scaf_13684-0.23
Bpl_scaf_13684-0.28
Bpl_scaf_13684-0.30
Bpl_scaf_13684-0.33
Bpl_scaf_13684-0.34
Bpl_scaf_13684-0.39TOLL-LIKE RECEPTOR
Bpl_scaf_13684-0.7TOLL-LIKE RECEPTOR
Bpl_scaf_13684-0.8TOLL-LIKE RECEPTOR
Bpl_scaf_13693-0.2MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED
Bpl_scaf_13697-0.2
Bpl_scaf_13697-0.25
Bpl_scaf_13697-0.45
Bpl_scaf_13697-0.47AP ENDONUCLEASE
Bpl_scaf_13697-0.48
Bpl_scaf_13697-0.50OXIDASE/PEROXIDASE
Bpl_scaf_13697-0.51
Bpl_scaf_13697-0.52
Bpl_scaf_13697-0.53
Bpl_scaf_13697-0.54OXIDASE/PEROXIDASE
Bpl_scaf_13697-0.55
Bpl_scaf_13697-0.56
Bpl_scaf_13698-0.1060S RIBOSOMAL PROTEIN L21
Bpl_scaf_13698-0.6UNCHARACTERIZED
Bpl_scaf_13698-0.7UNCHARACTERIZED
Bpl_scaf_13698-0.9UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Bpl_scaf_13698-1.10SLIT HOMOLOG
Bpl_scaf_13698-2.0
Bpl_scaf_13698-2.12TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE
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