Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_13712-1.9 | MITOCHONDRIAL CARRIER HOMOLOG |
| Bpl_scaf_1372-0.1 | SOLUTE CARRIER FAMILY 52 |
| Bpl_scaf_1372-0.14 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_1372-10.29 | WD REPEAT PROTEIN 8-RELATED |
| Bpl_scaf_1372-10.30 | CELLULAR TUMOR ANTIGEN P53 |
| Bpl_scaf_1372-11.13 | WD REPEAT PROTEIN 8-RELATED |
| Bpl_scaf_1372-11.14 | |
| Bpl_scaf_1372-2.5 | IMPACT-RELATED |
| Bpl_scaf_1372-2.7 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_1372-3.11 | PROTEIN CBG12054-RELATED |
| Bpl_scaf_1372-3.5 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| Bpl_scaf_1372-5.0 | |
| Bpl_scaf_1372-5.5 | PROTEIN TORNADO 1 |
| Bpl_scaf_1372-6.2 | GUANYLYL CYCLASE |
| Bpl_scaf_1372-7.7 | CATION-TRANSPORTING ATPASE-RELATED |
| Bpl_scaf_1372-8.10 | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 |
| Bpl_scaf_1372-8.4 | |
| Bpl_scaf_1372-8.8 | RIBOSOMAL RNA METHYLTRANSFERASE |
| Bpl_scaf_1372-9.10 | |
| Bpl_scaf_1372-9.7 | |
| Bpl_scaf_1372-9.8 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| Bpl_scaf_13720-0.0 | |
| Bpl_scaf_13720-1.4 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Bpl_scaf_13729-1.6 | |
| Bpl_scaf_13729-1.8 | SULFIDE:QUINONE OXIDOREDUCTASE |
| Bpl_scaf_1373-0.0 | |
| Bpl_scaf_1373-10.17 | PARATHYROID HORMONE-RESPONSIVE B1 GENE |
| Bpl_scaf_1373-10.18 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
| Bpl_scaf_1373-11.13 | LITHOSTATHINE |
| Bpl_scaf_1373-11.18 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Bpl_scaf_1373-11.27 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_1373-11.28 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_1373-2.6 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_1373-2.7 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_1373-6.1 | |
| Bpl_scaf_1373-7.16 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_1373-7.4 | |
| Bpl_scaf_1373-8.13 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_1373-8.16 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_1373-8.2 | |
| Bpl_scaf_1373-8.22 | ZGC:195170 |
| Bpl_scaf_1373-9.14 | ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44 |
| Bpl_scaf_1373-9.8 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
| Bpl_scaf_13745-0.4 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| Bpl_scaf_13745-0.5 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| Bpl_scaf_13745-1.10 | |
| Bpl_scaf_13745-1.8 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT |
| Bpl_scaf_13745-1.9 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| Bpl_scaf_13748-0.0 | |
| Bpl_scaf_13754-1.11 |
