About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_1303-0.1MAJOR VAULT PROTEIN
Bpl_scaf_1303-1.10
Bpl_scaf_1303-1.11MAJOR VAULT PROTEIN
Bpl_scaf_1303-1.9
Bpl_scaf_1303-2.15
Bpl_scaf_1303-2.16
Bpl_scaf_1303-2.17COLLAGEN ALPHA
Bpl_scaf_1303-2.18COLLAGEN ALPHA
Bpl_scaf_1303-2.2
Bpl_scaf_1303-2.21SOLUTE CARRIER FAMILY 13 MEMBER
Bpl_scaf_13030-0.0PHD-TYPE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_13030-1.19
Bpl_scaf_13030-1.20
Bpl_scaf_13030-1.5
Bpl_scaf_13030-1.9
Bpl_scaf_13036-2.2
Bpl_scaf_13036-3.0
Bpl_scaf_13036-3.1G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_13036-5.4
Bpl_scaf_13036-5.8
Bpl_scaf_13036-6.2LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN
Bpl_scaf_13036-7.8
Bpl_scaf_13036-8.5PDF RECEPTOR-LIKE PROTEIN-RELATED
Bpl_scaf_13037-0.2TRANSCRIPTION ELONGATION FACTOR SPT6
Bpl_scaf_13042-0.5ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Bpl_scaf_13042-1.1
Bpl_scaf_13042-1.13NYD-SP28 PROTEIN
Bpl_scaf_13042-1.14SOLUTE CARRIER FAMILY 35
Bpl_scaf_13042-1.4160S RIBOSOMAL PROTEIN L11-RELATED
Bpl_scaf_13042-1.43BASIGIN RELATED
Bpl_scaf_13042-1.44ZINC FINGER PROTEIN 200
Bpl_scaf_13044-0.0PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Bpl_scaf_13055-0.6NG5
Bpl_scaf_13055-1.18NG5
Bpl_scaf_13055-1.20
Bpl_scaf_13055-1.22PROTEIN FAM221A-RELATED
Bpl_scaf_13055-1.3
Bpl_scaf_13055-1.32UNCHARACTERIZED
Bpl_scaf_13055-1.33UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_13055-1.4
Bpl_scaf_13059-0.14OVOCHYMASE-RELATED
Bpl_scaf_13059-0.2
Bpl_scaf_13059-0.526S PROTEASOME REGULATORY SUBUNIT
Bpl_scaf_13059-1.12UBIQUITIN-LIKE PROTEIN 5
Bpl_scaf_13059-1.13SI:CH1073-475A24.1
Bpl_scaf_13059-1.14
Bpl_scaf_13059-1.3COILED-COIL DOMAIN-CONTAINING PROTEIN 180
Bpl_scaf_1306-0.2SCAVENGER RECEPTOR CLASS F
Bpl_scaf_13066-0.102-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED
Bpl_scaf_13066-0.6DNA2/NAM7 HELICASE FAMILY MEMBER
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