About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_13066-1.13CALRETICULIN AND CALNEXIN
Bpl_scaf_13066-1.14
Bpl_scaf_13066-1.16
Bpl_scaf_13066-1.17
Bpl_scaf_13068-0.0
Bpl_scaf_13071-0.2HYDROLASE
Bpl_scaf_13071-0.3UNCHARACTERIZED
Bpl_scaf_13071-1.8
Bpl_scaf_13071-1.9AMINE OXIDASE
Bpl_scaf_13079-0.2L-CYSTEINE DESULFHYDRASE
Bpl_scaf_1308-0.3NGG1 INTERACTING FACTOR 3
Bpl_scaf_13084-0.0
Bpl_scaf_13085-0.0
Bpl_scaf_13085-0.2
Bpl_scaf_13086-0.15GENE 5901-RELATED
Bpl_scaf_13086-0.16TEMPTIN
Bpl_scaf_13086-0.17TRANSIENT RECEPTOR POTENTIAL CHANNEL
Bpl_scaf_13086-0.5TRANSIENT RECEPTOR POTENTIAL CHANNEL
Bpl_scaf_13086-1.2P PROTEIN
Bpl_scaf_13086-1.3P PROTEIN
Bpl_scaf_13086-2.12APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_13086-2.14APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_13086-2.15POLYCOMB GROUP PROTEIN
Bpl_scaf_13086-2.16WW DOMAIN BINDING PROTEIN 4
Bpl_scaf_13086-2.26MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_13089-0.0
Bpl_scaf_13089-0.1
Bpl_scaf_1309-0.2
Bpl_scaf_13096-0.4
Bpl_scaf_13096-1.10CELL FATE DETERMINING PROTEIN MAB21-RELATED
Bpl_scaf_13096-1.7ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Bpl_scaf_13096-2.16FI04487P
Bpl_scaf_13096-2.19URICASE
Bpl_scaf_13096-2.31POTE ANKYRIN DOMAIN
Bpl_scaf_13096-2.32POTE ANKYRIN DOMAIN
Bpl_scaf_13096-2.35
Bpl_scaf_1310-0.1
Bpl_scaf_13101-0.0REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_13106-0.0
Bpl_scaf_1311-0.3
Bpl_scaf_1314-0.19
Bpl_scaf_1314-0.20CEREBELLIN-RELATED
Bpl_scaf_1314-0.21CEREBELLIN-RELATED
Bpl_scaf_1314-0.22
Bpl_scaf_1314-1.13MYOSIN HEAVY CHAIN, NON-MUSCLE
Bpl_scaf_1314-2.19
Bpl_scaf_1314-2.20HILLARIN
Bpl_scaf_1314-2.22COLLAGEN ALPHA
Bpl_scaf_1314-2.23
Bpl_scaf_1314-2.27BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2
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