Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_13754-1.14 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| Bpl_scaf_13754-1.16 | |
| Bpl_scaf_13775-0.28 | - |
| Bpl_scaf_13775-0.6 | ZINC FINGER PROTEIN |
| Bpl_scaf_13775-0.7 | SORTING NEXIN 20, 21 |
| Bpl_scaf_13775-1.14 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Bpl_scaf_13775-1.19 | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED |
| Bpl_scaf_13775-1.29 | |
| Bpl_scaf_13775-1.30 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
| Bpl_scaf_13775-1.31 | |
| Bpl_scaf_13775-1.32 | EUKARYOTIC TRANSLATION INITIATION FACTOR |
| Bpl_scaf_13775-1.8 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_1378-0.0 | |
| Bpl_scaf_1378-0.1 | |
| Bpl_scaf_1378-0.7 | |
| Bpl_scaf_13782-0.0 | |
| Bpl_scaf_13797-0.4 | TETRASPANIN |
| Bpl_scaf_13797-1.12 | |
| Bpl_scaf_13797-1.14 | |
| Bpl_scaf_13797-1.15 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_13797-1.16 | |
| Bpl_scaf_13797-1.9 | LIN-24 (TWENTY-FOUR) LIKE |
| Bpl_scaf_13797-2.11 | |
| Bpl_scaf_13797-2.12 | VITELLINE MEMBRANE OUTER LAYER PROTEIN I-RELATED |
| Bpl_scaf_13797-2.14 | |
| Bpl_scaf_13797-2.16 | |
| Bpl_scaf_13797-2.6 | |
| Bpl_scaf_13807-0.2 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| Bpl_scaf_13807-1.0 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| Bpl_scaf_13807-2.10 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| Bpl_scaf_13807-2.8 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
| Bpl_scaf_13809-0.3 | FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_13812-0.1 | |
| Bpl_scaf_13817-0.12 | |
| Bpl_scaf_13817-1.4 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_13817-2.0 | |
| Bpl_scaf_13817-2.1 | |
| Bpl_scaf_13817-2.3 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_13817-2.5 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_13817-2.6 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_13819-0.2 | |
| Bpl_scaf_13826-0.3 | INTEGRIN ALPHA |
| Bpl_scaf_13826-1.8 | |
| Bpl_scaf_13826-2.15 | JBTS17 |
| Bpl_scaf_13826-2.16 | JBTS17 |
| Bpl_scaf_13826-2.17 | JBTS17 |
| Bpl_scaf_13985-0.13 | ZINC FINGER PROTEIN |
| Bpl_scaf_13985-0.24 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Bpl_scaf_13985-0.26 | REVERSE TRANSCRIPTASES |
| Bpl_scaf_13985-0.4 |
