About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110 Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s047.g0156.t1EG:EG0003.4 PROTEIN-RELATED
Lsat_s047.g0157.t1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44
Lsat_s047.g0158.t1OXIDASE/PEROXIDASE
Lsat_s047.g0159.t1DUAL OXIDASE 2
Lsat_s047.g0160.t1
Lsat_s047.g0161.t1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Lsat_s047.g0162.t1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Lsat_s047.g0163.t1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Lsat_s047.g0164.t1
Lsat_s047.g0165.t1PROGRAMMED CELL DEATH PROTEIN 7
Lsat_s047.g0166.t1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Lsat_s047.g0167.t1IMPORTIN-7, 8, 11
Lsat_s047.g0168.t1
Lsat_s047.g0169.t1
Lsat_s047.g0170.t1IMPORTIN-7, 8, 11
Lsat_s047.g0171.t1F-BOX ONLY PROTEIN 4
Lsat_s047.g0172.t1KELCH REPEAT DOMAIN
Lsat_s047.g0173.t1MYOSIN
Lsat_s047.g0174.t1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Lsat_s047.g0175.t1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S27
Lsat_s047.g0176.t1CGI-41 METHYLTRANSFERASE
Lsat_s047.g0177.t1MYOTUBULARIN-RELATED
Lsat_s047.g0178.t1MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
Lsat_s047.g0179.t1ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Lsat_s047.g0180.t1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Lsat_s048.g0001.t1
Lsat_s048.g0002.t1
Lsat_s048.g0003.t1
Lsat_s048.g0004.t1
Lsat_s048.g0005.t1LEUCINE-RICH REPEAT-CONTAINING
Lsat_s048.g0006.t1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
Lsat_s048.g0007.t1DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2
Lsat_s048.g0008.t1KIF1-BINDING PROTEIN
Lsat_s048.g0009.t1NUMB
Lsat_s048.g0010.t1
Lsat_s048.g0011.t1
Lsat_s048.g0012.t1
Lsat_s048.g0013.t1EGF-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s048.g0014.t1NOTCH LIGAND FAMILY MEMBER
Lsat_s048.g0015.t1CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
Lsat_s048.g0016.t1
Lsat_s048.g0017.t1
Lsat_s048.g0018.t1
Lsat_s048.g0019.t1
Lsat_s048.g0020.t1
Lsat_s048.g0021.t1CRUMBS FAMILY MEMBER
Lsat_s048.g0022.t1NOTCH LIGAND FAMILY MEMBER
Lsat_s048.g0023.t1CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
Lsat_s048.g0024.t1CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
Lsat_s048.g0025.t1METALLOPROTEASE M41 FTSH
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