About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08414ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08415CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08416FI04643P-RELATED
Paelopatides08417EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides08418-
Paelopatides08419ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08420L-GULONOLACTONE OXIDASE
Paelopatides08421-
Paelopatides08422-
Paelopatides08423FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides08424FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides08425RETROTRANSPOSON
Paelopatides08427G-PROTEIN COUPLED RECEPTOR
Paelopatides08428PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides08429CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08430-
Paelopatides08431MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L51
Paelopatides08432NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides08433AP ENDONUCLEASE
Paelopatides08434NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
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