About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08328FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides08329FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides08330EXODEOXYRIBONUCLEASE III
Paelopatides08331REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08332PEPTIDYLPROLYL ISOMERASE
Paelopatides08333AGAP008170-PA
Paelopatides08334-
Paelopatides08335-
Paelopatides083396-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
Paelopatides08340HIV-INDUCED PROTEIN-7-LIKE PROTEASE
Paelopatides08341CARBOHYDRATE SULFOTRANSFERASE
Paelopatides08342FI04643P-RELATED
Paelopatides08343-
Paelopatides08344ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08345-
Paelopatides08348-
Paelopatides08349-
Paelopatides08350HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides08351ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08352L1 TRANSPOSABLE ELEMENT-RELATED
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