About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08287DED DOMAIN-CONTAINING PROTEIN
Paelopatides08288LATROPHILIN RECEPTOR-LIKE PROTEIN A
Paelopatides08289ENZYMATIC POLYPROTEIN-RELATED
Paelopatides08290ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides08291ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides08292-
Paelopatides08293PROTEIN SSUH2 HOMOLOG
Paelopatides08294ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08295-
Paelopatides08296-
Paelopatides08297CYCLIN
Paelopatides08298PROTEIN CBG26694
Paelopatides08299UNCHARACTERIZED
Paelopatides08300ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08301DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE
Paelopatides08302DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE
Paelopatides08303DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE
Paelopatides08304-
Paelopatides08305-
Paelopatides08306ZINC FINGER PROTEIN
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