About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08393DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides08394NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides08395-
Paelopatides08396MONOCARBOXYLATE TRANSPORTER
Paelopatides08397MONOCARBOXYLATE TRANSPORTER
Paelopatides08399-
Paelopatides08400-
Paelopatides08401PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides08402REVERSE TRANSCRIPTASE
Paelopatides08403-
Paelopatides08404PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
Paelopatides08405CENTROMERE PROTEIN V
Paelopatides08406CENTROMERE PROTEIN V
Paelopatides08407DELETED IN ORAL CANCER 1/CDK2-ASSOCIATED PROTEIN 1
Paelopatides08408-
Paelopatides08409-
Paelopatides08410PROTEIN CBG26694
Paelopatides08411-
Paelopatides08412ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides08413PDZ AND LIM DOMAIN PROTEIN ZASP
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