About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08544TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides08545ENDONUCLEASE
Paelopatides08546-
Paelopatides08547PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides08548CALCIUM-BINDING PROTEIN 8-RELATED
Paelopatides08549-
Paelopatides08550AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides08551BUCENTAUR RELATED
Paelopatides08552AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides08554SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN
Paelopatides08555PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides08556-
Paelopatides08557PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides08558DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides08559F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08560PROTEIN CBG26694
Paelopatides08561-
Paelopatides08562POL PROTEIN
Paelopatides08563ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides08564-
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