About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08608REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08609REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08612PROTEIN CBG26694
Paelopatides08613PROTEIN CBG26694
Paelopatides08614PROTEIN CBG26694
Paelopatides08615-
Paelopatides08616-
Paelopatides08617TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides08618REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08619CYTOCHROME P450 508A4-RELATED
Paelopatides08620ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides08621DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides08622-
Paelopatides08623RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides08624-
Paelopatides08625REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08626-
Paelopatides08627PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
Paelopatides08628PROTEIN CBG26694
Paelopatides08629HVA22-LIKE PROTEINS
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