About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08585ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08586TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15
Paelopatides08589-
Paelopatides08590-
Paelopatides08591G-PROTEIN COUPLED RECEPTOR
Paelopatides08593MONOCARBOXYLATE TRANSPORTER
Paelopatides08594TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides08595-
Paelopatides08596ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides08597NETRIN/LAMININ-RELATED
Paelopatides08598NETRIN/LAMININ-RELATED
Paelopatides08599CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Paelopatides08600CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Paelopatides08601-
Paelopatides08602-
Paelopatides08603NETRIN RECEPTOR UNC5
Paelopatides08604PROTEIN CBG26694
Paelopatides08605TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides08606TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides08607REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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