About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08630-
Paelopatides08631PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides08632TRANSPOSON
Paelopatides08633REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08634LD24721P
Paelopatides08635UNCHARACTERIZED
Paelopatides08636ZGC:195170
Paelopatides08637REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08638PEPTIDASE M20
Paelopatides08639TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides086415'-NUCLEOTIDASE-RELATED
Paelopatides08642SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08643CROSSVEINLESS 2
Paelopatides08644THAP DOMAIN-CONTAINING
Paelopatides08645-
Paelopatides08646CXYORF1
Paelopatides08647PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides08648-
Paelopatides08649GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides08650-
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