About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08651RNA-BINDING PROTEIN LUC7-RELATED
Paelopatides08652-
Paelopatides08657-
Paelopatides08658CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08659CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08660-
Paelopatides08661RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Paelopatides08662-
Paelopatides08663DNA-DAMAGE-INDUCIBLE TRANSCRIPT 4 PROTEIN DDIT4
Paelopatides08664HISTONE H2A
Paelopatides08665-
Paelopatides08666MATING RESPONSE PROTEIN POI2
Paelopatides08667-
Paelopatides08668-
Paelopatides08669PROTEIN CBG26694
Paelopatides08670-
Paelopatides08672F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides08673-
Paelopatides08674-
Paelopatides08675CYTOKINE RECEPTOR
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