About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020702.1ZINC FINGER AND BTB DOMAIN-CONTAINING
ENSZWYP00000020703.1
ENSZWYP00000020704.1D-ERYTHRULOSE REDUCTASE
ENSZWYP00000020705.1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42
ENSZWYP00000020706.1CARBON CATABOLITE REPRESSOR PROTEIN 4
ENSZWYP00000020707.1
ENSZWYP00000020708.1
ENSZWYP00000020709.1PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
ENSZWYP00000020710.1MATRIX PROTEIN, PUTATIVE-RELATED
ENSZWYP00000020711.1
ENSZWYP00000020712.1CYTOKINE RECEPTOR
ENSZWYP00000020713.1CYSTINOSIN
ENSZWYP00000020714.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000020715.1
ENSZWYP00000020716.1PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN
ENSZWYP00000020717.1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
ENSZWYP00000020718.11-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
ENSZWYP00000020719.1
ENSZWYP00000020720.1RNA 3' TERMINAL PHOSPHATE CYCLASE
ENSZWYP00000020721.1
ENSZWYP00000020722.1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
ENSZWYP00000020723.1GLYCINE N-METHYLTRANSFERASE
ENSZWYP00000020724.1
ENSZWYP00000020725.1RNA 3' TERMINAL PHOSPHATE CYCLASE
ENSZWYP00000020726.1AMINOTRANSFERASE CLASS III
ENSZWYP00000020727.1ACID PHOSPHATASE-RELATED
ENSZWYP00000020728.1CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL
ENSZWYP00000020729.1RNA 3' TERMINAL PHOSPHATE CYCLASE
ENSZWYP00000020730.1GLUTAMATE DECARBOXYLASE-RELATED
ENSZWYP00000020731.1
ENSZWYP00000020732.1RNA 3' TERMINAL PHOSPHATE CYCLASE
ENSZWYP00000020733.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
ENSZWYP00000020734.1HL01030P-RELATED
ENSZWYP00000020735.1
ENSZWYP00000020736.1
ENSZWYP00000020737.1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
ENSZWYP00000020738.1GLUTAMATE DECARBOXYLASE-RELATED
ENSZWYP00000020739.1AMINOTRANSFERASE CLASS III
ENSZWYP00000020740.1TRANS-SULFURATION ENZYME FAMILY MEMBER
ENSZWYP00000020741.1CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL
ENSZWYP00000020742.1XAA-PRO AMINOPEPTIDASE 1
ENSZWYP00000020743.1
ENSZWYP00000020744.1AMINOMETHYLTRANSFERASE
ENSZWYP00000020745.1AMINOMETHYLTRANSFERASE
ENSZWYP00000020746.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
ENSZWYP00000020747.1
ENSZWYP00000020748.1AMINOMETHYLTRANSFERASE
ENSZWYP00000020749.1F-BOX ONLY PROTEIN 4
ENSZWYP00000020750.1
ENSZWYP00000020751.1
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