About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020652.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
ENSZWYP00000020653.1SMALL NUCLEAR RIBONUCLEOPROTEIN
ENSZWYP00000020654.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
ENSZWYP00000020655.1CENTROSOMAL PROTEIN OF 78 KDA
ENSZWYP00000020656.1
ENSZWYP00000020657.1
ENSZWYP00000020658.1SLD5 PROTEIN
ENSZWYP00000020659.1TRANSMEMBRANE PROTEIN 127
ENSZWYP00000020660.1ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
ENSZWYP00000020661.1
ENSZWYP00000020662.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
ENSZWYP00000020663.1AMINOMETHYLTRANSFERASE
ENSZWYP00000020664.1TETRASPANIN
ENSZWYP00000020665.1PROTEIN EVA-1
ENSZWYP00000020666.1UNCHARACTERIZED
ENSZWYP00000020667.1
ENSZWYP00000020668.1RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
ENSZWYP00000020669.1
ENSZWYP00000020670.1COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
ENSZWYP00000020671.1
ENSZWYP00000020672.1ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
ENSZWYP00000020673.1
ENSZWYP00000020674.1PROTEIN FAM183B
ENSZWYP00000020675.1TETRASPANIN
ENSZWYP00000020676.1
ENSZWYP00000020677.1
ENSZWYP00000020678.1GUANINE NUCLEOTIDE EXCHANGE C9ORF72
ENSZWYP00000020679.1
ENSZWYP00000020680.1TELOMERIC REPEAT-BINDING FACTOR 1 TERF1
ENSZWYP00000020681.1
ENSZWYP00000020682.1SENTRIN/SUMO-SPECIFIC PROTEASE
ENSZWYP00000020683.1
ENSZWYP00000020684.1
ENSZWYP00000020685.1CARBON CATABOLITE REPRESSOR PROTEIN 4
ENSZWYP00000020686.1
ENSZWYP00000020687.1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
ENSZWYP00000020688.1GUANINE NUCLEOTIDE EXCHANGE C9ORF72
ENSZWYP00000020689.1FER-1-LIKE
ENSZWYP00000020690.1CHIMERIN FAMILY MEMBER
ENSZWYP00000020691.1UNCHARACTERIZED
ENSZWYP00000020692.1PHD-TYPE DOMAIN-CONTAINING PROTEIN
ENSZWYP00000020693.1
ENSZWYP00000020694.1PHOSPHOHEXOMUTASE FAMILY MEMBER
ENSZWYP00000020695.1
ENSZWYP00000020696.1
ENSZWYP00000020697.1D-ERYTHRULOSE REDUCTASE
ENSZWYP00000020698.1
ENSZWYP00000020699.1CARBON CATABOLITE REPRESSOR PROTEIN 4
ENSZWYP00000020700.1ELECTRON TRANSPORT OXIDOREDUCTASE
ENSZWYP00000020701.1
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