About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020802.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
ENSZWYP00000020803.150S RIBOSOMAL PROTEIN L15
ENSZWYP00000020804.1
ENSZWYP00000020805.1HOMEOBOX PROTEIN ARISTALESS
ENSZWYP00000020806.1-
ENSZWYP00000020807.1
ENSZWYP00000020808.1TRANSMEMBRANE PROTEIN 214
ENSZWYP00000020809.1PROTEIN CBG12054-RELATED
ENSZWYP00000020810.150S RIBOSOMAL PROTEIN L15
ENSZWYP00000020811.1
ENSZWYP00000020812.1
ENSZWYP00000020813.1CRUMBS FAMILY MEMBER
ENSZWYP00000020814.1
ENSZWYP00000020815.1
ENSZWYP00000020816.1
ENSZWYP00000020817.1-
ENSZWYP00000020818.1
ENSZWYP00000020819.1MONOCARBOXYLATE TRANSPORTER
ENSZWYP00000020820.1
ENSZWYP00000020821.1
ENSZWYP00000020822.1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
ENSZWYP00000020823.1PROLACTIN REGULATORY ELEMENT BINDING PROTEIN
ENSZWYP00000020824.1MONOCARBOXYLATE TRANSPORTER
ENSZWYP00000020825.1
ENSZWYP00000020826.1GLYCOSYL HYDROLASE-RELATED
ENSZWYP00000020827.1-
ENSZWYP00000020828.1
ENSZWYP00000020829.1-
ENSZWYP00000020830.1BETA-1,4-GALACTOSYLTRANSFERASE
ENSZWYP00000020831.1TOLL-LIKE RECEPTOR
ENSZWYP00000020832.1SI:CH211-108C17.2-RELATED-RELATED
ENSZWYP00000020833.1PROLACTIN REGULATORY ELEMENT BINDING PROTEIN
ENSZWYP00000020834.1
ENSZWYP00000020835.1PHOSPHATASE AND ACTIN REGULATOR PHACTR
ENSZWYP00000020836.1-
ENSZWYP00000020837.1
ENSZWYP00000020838.1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 99
ENSZWYP00000020839.1
ENSZWYP00000020840.1-
ENSZWYP00000020841.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
ENSZWYP00000020842.1-
ENSZWYP00000020843.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000020844.1PHOSPHATASE AND ACTIN REGULATOR PHACTR
ENSZWYP00000020845.1
ENSZWYP00000020846.1
ENSZWYP00000020847.1POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED
ENSZWYP00000020848.1
ENSZWYP00000020849.1MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED
ENSZWYP00000020850.1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 99
ENSZWYP00000020851.1CDC42 SMALL EFFECTOR PROTEIN HOMOLOG
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