Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s055.g0054.t1 | |
| Lsat_s055.g0055.t1 | 39S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL |
| Lsat_s055.g0056.t1 | ZINC FINGER PROTEIN |
| Lsat_s055.g0057.t1 | P-SELECTIN GLYCOPROTEIN LIGAND-1 |
| Lsat_s055.g0058.t1 | |
| Lsat_s055.g0059.t1 | |
| Lsat_s055.g0060.t1 | |
| Lsat_s055.g0061.t1 | IONOTROPIC GLUTAMATE RECEPTOR |
| Lsat_s055.g0062.t1 | |
| Lsat_s055.g0063.t1 | |
| Lsat_s055.g0064.t1 | |
| Lsat_s055.g0065.t1 | |
| Lsat_s055.g0066.t1 | ORGANIC ANION TRANSPORTER |
| Lsat_s055.g0067.t1 | |
| Lsat_s055.g0068.t1 | |
| Lsat_s055.g0069.t1 | |
| Lsat_s055.g0070.t1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Lsat_s055.g0071.t1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
| Lsat_s055.g0072.t1 | ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN |
| Lsat_s055.g0073.t1 | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE |
| Lsat_s055.g0074.t1 | MATERNAL EFFECT PROTEIN STAUFEN |
| Lsat_s055.g0075.t1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Lsat_s055.g0076.t1 | |
| Lsat_s055.g0077.t1 | |
| Lsat_s055.g0078.t1 | UNCHARACTERIZED |
| Lsat_s055.g0079.t1 | U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN |
| Lsat_s055.g0080.t1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
| Lsat_s055.g0081.t1 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
| Lsat_s055.g0082.t1 | |
| Lsat_s055.g0083.t1 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
| Lsat_s055.g0084.t1 | |
| Lsat_s055.g0085.t1 | RECEPTOR-BINDING CANCER ANTIGEN EXPRESSED ON SISO CELLS CANCER ASSOCIATED SURFACE ANTIGEN RCAS1 ESTROGEN RECEPTOR-BINDING FRAGMENT- ASSOCIATED GENE 9 PROTEIN |
| Lsat_s055.g0086.t1 | |
| Lsat_s055.g0087.t1 | UNCHARACTERIZED |
| Lsat_s055.g0088.t1 | PROTEIN LKAAEAR1 |
| Lsat_s055.g0089.t1 | MYOSIN REGULATORY LIGHT CHAIN 2 |
| Lsat_s055.g0090.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s055.g0091.t1 | |
| Lsat_s055.g0092.t1 | T-BOX PROTEIN-RELATED |
| Lsat_s055.g0093.t1 | - |
| Lsat_s055.g0094.t1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| Lsat_s055.g0095.t1 | RNA BINDING PROTEIN PUMILIO-RELATED |
| Lsat_s055.g0096.t1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Lsat_s055.g0097.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s055.g0098.t1 | AGAP008170-PA |
| Lsat_s055.g0099.t1 | |
| Lsat_s055.g0100.t1 | CLATHRIN LIGHT CHAIN |
| Lsat_s055.g0101.t1 | U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN |
| Lsat_s055.g0102.t1 | DNA-DIRECTED RNA POLYMERASE |
| Lsat_s055.g0103.t1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
