Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s055.g0104.t1 | ARSENITE-RESISTANCE PROTEIN 2 |
| Lsat_s055.g0105.t1 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Lsat_s055.g0106.t1 | PALMITOYLTRANSFERASE ZDHHC16 |
| Lsat_s055.g0107.t1 | PKSB |
| Lsat_s055.g0108.t1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| Lsat_s055.g0109.t1 | |
| Lsat_s055.g0110.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Lsat_s055.g0111.t1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
| Lsat_s055.g0112.t1 | ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN |
| Lsat_s055.g0113.t1 | DIOXYGENASE RV0097-RELATED |
| Lsat_s055.g0114.t1 | RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT |
| Lsat_s055.g0115.t1 | TRANSMEMBRANE PROTEIN 220 |
| Lsat_s055.g0116.t1 | ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7 |
| Lsat_s055.g0117.t1 | ODD-SKIPPED - RELATED |
| Lsat_s055.g0118.t1 | MATING RESPONSE PROTEIN POI2 |
| Lsat_s055.g0119.t1 | |
| Lsat_s055.g0120.t1 | |
| Lsat_s055.g0121.t1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Lsat_s055.g0122.t1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| Lsat_s055.g0123.t1 | FAS-ASSOCIATED PROTEIN |
| Lsat_s055.g0124.t1 | ZINC FINGER PROTEIN |
| Lsat_s055.g0125.t1 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED |
| Lsat_s055.g0126.t1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 |
| Lsat_s055.g0127.t1 | |
| Lsat_s055.g0128.t1 | SERINE-THREONINE PROTEIN KINASE |
| Lsat_s055.g0129.t1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| Lsat_s055.g0130.t1 | PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN |
| Lsat_s055.g0131.t1 | |
| Lsat_s055.g0132.t1 | |
| Lsat_s055.g0133.t1 | CRUMBS FAMILY MEMBER |
| Lsat_s055.g0134.t1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Lsat_s055.g0135.t1 | |
| Lsat_s055.g0136.t1 | CRUMBS FAMILY MEMBER |
| Lsat_s055.g0137.t1 | T COMPLEX PROTEIN 10 |
| Lsat_s055.g0138.t1 | |
| Lsat_s055.g0139.t1 | |
| Lsat_s055.g0140.t1 | EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C |
| Lsat_s055.g0141.t1 | CULLIN |
| Lsat_s055.g0142.t1 | |
| Lsat_s055.g0143.t1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Lsat_s055.g0144.t1 | |
| Lsat_s055.g0145.t1 | |
| Lsat_s055.g0146.t1 | ZINC FINGER PROTEIN |
| Lsat_s055.g0147.t1 | |
| Lsat_s055.g0148.t1 | ZINC FINGER PROTEIN |
| Lsat_s055.g0149.t1 | |
| Lsat_s055.g0150.t1 | |
| Lsat_s055.g0151.t1 | |
| Lsat_s055.g0152.t1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Lsat_s055.g0153.t1 | CDGSH IRON SULFUR DOMAIN PROTEIN HOMOLOG |
