Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s056.g0044.t1 | |
Lsat_s056.g0045.t1 | |
Lsat_s056.g0046.t1 | |
Lsat_s056.g0047.t1 | HYR DOMAIN-CONTAINING PROTEIN |
Lsat_s056.g0048.t1 | HYR DOMAIN-CONTAINING PROTEIN |
Lsat_s056.g0049.t1 | |
Lsat_s056.g0050.t1 | COAGULATION FACTOR |
Lsat_s056.g0051.t1 | HYR DOMAIN-CONTAINING PROTEIN |
Lsat_s056.g0052.t1 | |
Lsat_s056.g0053.t1 | HYR DOMAIN-CONTAINING PROTEIN |
Lsat_s056.g0054.t1 | |
Lsat_s056.g0055.t1 | HYR DOMAIN-CONTAINING PROTEIN |
Lsat_s056.g0056.t1 | |
Lsat_s056.g0057.t1 | PROTEIN CBR-CLEC-78 |
Lsat_s056.g0058.t1 | |
Lsat_s056.g0059.t1 | KICSTOR COMPLEX PROTEIN C12ORF66 |
Lsat_s056.g0060.t1 | |
Lsat_s056.g0061.t1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
Lsat_s056.g0062.t1 | FLAVIN MONOAMINE OXIDASE |
Lsat_s056.g0063.t1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
Lsat_s056.g0064.t1 | NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN |
Lsat_s056.g0065.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Lsat_s056.g0066.t1 | NOTCH LIGAND FAMILY MEMBER |
Lsat_s056.g0067.t1 | CRUMBS FAMILY MEMBER |
Lsat_s056.g0068.t1 | |
Lsat_s056.g0069.t1 | NOTCH LIGAND FAMILY MEMBER |
Lsat_s056.g0070.t1 | |
Lsat_s056.g0071.t1 | |
Lsat_s056.g0072.t1 | CYTOSOLIC CARBOXYPEPTIDASE |
Lsat_s056.g0073.t1 | SYNDECAN |
Lsat_s056.g0074.t1 | TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 |
Lsat_s056.g0075.t1 | SORTING NEXIN 17 AND 27 |
Lsat_s056.g0076.t1 | NUCLEOTIDE KINASE |
Lsat_s056.g0077.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Lsat_s056.g0078.t1 | |
Lsat_s056.g0079.t1 | |
Lsat_s056.g0080.t1 | |
Lsat_s056.g0081.t1 | SCC1 / RAD21 FAMILY MEMBER |
Lsat_s056.g0082.t1 | BAX INHIBITOR-RELATED |
Lsat_s056.g0083.t1 | |
Lsat_s056.g0084.t1 | ATILLA, ISOFORM B-RELATED-RELATED |
Lsat_s056.g0085.t1 | NUCLEAR SEGREGATION PROTEIN BFR1 |
Lsat_s056.g0086.t1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
Lsat_s056.g0087.t1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
Lsat_s056.g0088.t1 | |
Lsat_s056.g0089.t1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
Lsat_s056.g0090.t1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
Lsat_s056.g0091.t1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
Lsat_s056.g0092.t1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
Lsat_s056.g0093.t1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |