Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)
Lamellibrachia columna Southward, 1991
(Southward et al., 1991 Kobayashi et al., 2015)
Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.
The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality
The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia columna | Annelida | - | Cold seep | 810-1,870 | cold seeps off the east coast of the North Island of New Zealand | 53616 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
---|---|---|---|---|---|---|---|---|---|---|---|
wsLamColu1.1 | 879.7Mb | Chromosome | 2023 | CAVLEN01 | WELLCOME SANGER INSTITUTE | PRJEB68353 | 97.30 | 472.9/472.5 | 40.5 | - | 32,318 |
Gene ID | Description |
---|---|
ENSZWYP00000021352.1 | REVERSE TRANSCRIPTASES |
ENSZWYP00000021353.1 | INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN |
ENSZWYP00000021354.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
ENSZWYP00000021355.1 | MRNA EXPORT FACTOR AND BUB3 |
ENSZWYP00000021356.1 | ALPHA-MANNOSIDASE 2C1 |
ENSZWYP00000021357.1 | HEPARANASE |
ENSZWYP00000021358.1 | |
ENSZWYP00000021359.1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
ENSZWYP00000021360.1 | 40S RIBOSOMAL PROTEIN S28 |
ENSZWYP00000021361.1 | |
ENSZWYP00000021362.1 | |
ENSZWYP00000021363.1 | REGULATOR OF G-PROTEIN SIGNALING LOCO |
ENSZWYP00000021364.1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
ENSZWYP00000021365.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
ENSZWYP00000021366.1 | CALCIUM BINDING PROTEINS |
ENSZWYP00000021367.1 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
ENSZWYP00000021368.1 | SNF2/RAD54 FAMILY MEMBER |
ENSZWYP00000021369.1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
ENSZWYP00000021370.1 | |
ENSZWYP00000021371.1 | CALCIUM BINDING PROTEINS |
ENSZWYP00000021372.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
ENSZWYP00000021373.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
ENSZWYP00000021374.1 | |
ENSZWYP00000021375.1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
ENSZWYP00000021376.1 | KELCH PROTEIN |
ENSZWYP00000021377.1 | |
ENSZWYP00000021378.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
ENSZWYP00000021379.1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
ENSZWYP00000021380.1 | 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN |
ENSZWYP00000021381.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
ENSZWYP00000021382.1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
ENSZWYP00000021383.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
ENSZWYP00000021384.1 | 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN |
ENSZWYP00000021385.1 | |
ENSZWYP00000021386.1 | PROTEIN SIDEKICK |
ENSZWYP00000021387.1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
ENSZWYP00000021388.1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
ENSZWYP00000021389.1 | |
ENSZWYP00000021390.1 | TATA ELEMENT MODULATORY FACTOR TMF1 |
ENSZWYP00000021391.1 | PROTEIN CBG16200 |
ENSZWYP00000021392.1 | |
ENSZWYP00000021393.1 | RAI16 PROTEIN-RELATED |
ENSZWYP00000021394.1 | ODD-SKIPPED - RELATED |
ENSZWYP00000021395.1 | |
ENSZWYP00000021396.1 | |
ENSZWYP00000021397.1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
ENSZWYP00000021398.1 | |
ENSZWYP00000021399.1 | |
ENSZWYP00000021400.1 | ODD-SKIPPED - RELATED |
ENSZWYP00000021401.1 | PATCHED-RELATED |