About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original description

(Southward et al., 1991  Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000021352.1REVERSE TRANSCRIPTASES
ENSZWYP00000021353.1INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN
ENSZWYP00000021354.1ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
ENSZWYP00000021355.1MRNA EXPORT FACTOR AND BUB3
ENSZWYP00000021356.1ALPHA-MANNOSIDASE 2C1
ENSZWYP00000021357.1HEPARANASE
ENSZWYP00000021358.1
ENSZWYP00000021359.1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
ENSZWYP00000021360.140S RIBOSOMAL PROTEIN S28
ENSZWYP00000021361.1
ENSZWYP00000021362.1
ENSZWYP00000021363.1REGULATOR OF G-PROTEIN SIGNALING LOCO
ENSZWYP00000021364.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000021365.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
ENSZWYP00000021366.1CALCIUM BINDING PROTEINS
ENSZWYP00000021367.1GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45
ENSZWYP00000021368.1SNF2/RAD54 FAMILY MEMBER
ENSZWYP00000021369.1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
ENSZWYP00000021370.1
ENSZWYP00000021371.1CALCIUM BINDING PROTEINS
ENSZWYP00000021372.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
ENSZWYP00000021373.160S RIBOSOMAL PROTEIN L11-RELATED
ENSZWYP00000021374.1
ENSZWYP00000021375.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000021376.1KELCH PROTEIN
ENSZWYP00000021377.1
ENSZWYP00000021378.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
ENSZWYP00000021379.1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
ENSZWYP00000021380.128 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN
ENSZWYP00000021381.160S RIBOSOMAL PROTEIN L11-RELATED
ENSZWYP00000021382.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
ENSZWYP00000021383.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
ENSZWYP00000021384.128 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN
ENSZWYP00000021385.1
ENSZWYP00000021386.1PROTEIN SIDEKICK
ENSZWYP00000021387.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
ENSZWYP00000021388.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
ENSZWYP00000021389.1
ENSZWYP00000021390.1TATA ELEMENT MODULATORY FACTOR TMF1
ENSZWYP00000021391.1PROTEIN CBG16200
ENSZWYP00000021392.1
ENSZWYP00000021393.1RAI16 PROTEIN-RELATED
ENSZWYP00000021394.1ODD-SKIPPED - RELATED
ENSZWYP00000021395.1
ENSZWYP00000021396.1
ENSZWYP00000021397.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
ENSZWYP00000021398.1
ENSZWYP00000021399.1
ENSZWYP00000021400.1ODD-SKIPPED - RELATED
ENSZWYP00000021401.1PATCHED-RELATED
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