About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original description

(Southward et al., 1991  Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000021402.1ALPHA CATENIN
ENSZWYP00000021403.1PUTATIVE-RELATED
ENSZWYP00000021404.1PROTEIN CBG16200
ENSZWYP00000021405.1TATA ELEMENT MODULATORY FACTOR TMF1
ENSZWYP00000021406.1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
ENSZWYP00000021407.1UNCHARACTERIZED
ENSZWYP00000021408.1
ENSZWYP00000021409.1RAI16 PROTEIN-RELATED
ENSZWYP00000021410.1
ENSZWYP00000021411.1
ENSZWYP00000021412.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
ENSZWYP00000021413.1ALPHA CATENIN
ENSZWYP00000021414.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
ENSZWYP00000021415.1DNA LIGASE 4
ENSZWYP00000021416.1SREK1IP1 FAMILY MEMBER
ENSZWYP00000021417.1PROTEIN CBG16200
ENSZWYP00000021418.1ANKYRIN REPEAT-CONTAINING
ENSZWYP00000021419.1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
ENSZWYP00000021420.1
ENSZWYP00000021421.1
ENSZWYP00000021422.1
ENSZWYP00000021423.1
ENSZWYP00000021424.1
ENSZWYP00000021425.1
ENSZWYP00000021426.1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
ENSZWYP00000021427.1SREK1IP1 FAMILY MEMBER
ENSZWYP00000021428.1DNA LIGASE 4
ENSZWYP00000021429.1RNA HELICASE
ENSZWYP00000021430.1SPERMATOGENESIS-ASSOCIATED 4-RELATED
ENSZWYP00000021431.1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
ENSZWYP00000021432.1
ENSZWYP00000021433.1G-PROTEIN COUPLED RECEPTOR
ENSZWYP00000021434.1
ENSZWYP00000021435.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
ENSZWYP00000021436.1SPERMATOGENESIS-ASSOCIATED 4-RELATED
ENSZWYP00000021437.1UNCHARACTERIZED
ENSZWYP00000021438.1HEPARAN SULFATE SULFOTRANSFERASE
ENSZWYP00000021439.1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
ENSZWYP00000021440.1SEROTONIN N-ACETYLTRANSFERASE
ENSZWYP00000021441.1
ENSZWYP00000021442.1RNA HELICASE
ENSZWYP00000021443.1
ENSZWYP00000021444.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
ENSZWYP00000021445.1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
ENSZWYP00000021446.1SPERMATOGENESIS-ASSOCIATED 4-RELATED
ENSZWYP00000021447.1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
ENSZWYP00000021448.1DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
ENSZWYP00000021449.1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
ENSZWYP00000021450.1LD24721P
ENSZWYP00000021451.1
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