About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000021452.1THO COMPLEX SUBUNIT 6 HOMOLOG
ENSZWYP00000021453.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
ENSZWYP00000021454.1GLUCOSE-1-PHOSPHATE THYMIDYLTRANSFERASE
ENSZWYP00000021455.1ZINC FINGER PROTEIN
ENSZWYP00000021456.1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
ENSZWYP00000021457.1LD24721P
ENSZWYP00000021458.1OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1
ENSZWYP00000021459.1COLLAGEN ALPHA
ENSZWYP00000021460.1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
ENSZWYP00000021461.1AGAP001331-PA-RELATED
ENSZWYP00000021462.1TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
ENSZWYP00000021463.1SYNTAXIN
ENSZWYP00000021464.1
ENSZWYP00000021465.1DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
ENSZWYP00000021466.1
ENSZWYP00000021467.1NUCLEAR HORMONE RECEPTOR
ENSZWYP00000021468.1COLLAGEN
ENSZWYP00000021469.1THO COMPLEX SUBUNIT 3 THO3
ENSZWYP00000021470.1NADPH OXIDASE
ENSZWYP00000021471.1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
ENSZWYP00000021472.1LD24721P
ENSZWYP00000021473.1
ENSZWYP00000021474.1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
ENSZWYP00000021475.1
ENSZWYP00000021476.1
ENSZWYP00000021477.1SYNTAXIN
ENSZWYP00000021478.1COLLAGEN ALPHA
ENSZWYP00000021479.1NUCLEAR HORMONE RECEPTOR
ENSZWYP00000021480.1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10
ENSZWYP00000021481.1THO COMPLEX SUBUNIT 3 THO3
ENSZWYP00000021482.1
ENSZWYP00000021483.1
ENSZWYP00000021484.1
ENSZWYP00000021485.1LD33804P
ENSZWYP00000021486.1TRANSMEMBRANE PROTEIN 246
ENSZWYP00000021487.1
ENSZWYP00000021488.1RIBULOKINASE
ENSZWYP00000021489.1
ENSZWYP00000021490.1
ENSZWYP00000021491.1
ENSZWYP00000021492.1
ENSZWYP00000021493.1
ENSZWYP00000021494.14-NITROPHENYLPHOSPHATASE-RELATED
ENSZWYP00000021495.1DELTEX-RELATED
ENSZWYP00000021496.1DESUMOYLATING ISOPEPTIDASE
ENSZWYP00000021497.1
ENSZWYP00000021498.1
ENSZWYP00000021499.1INHIBITOR OF APOPTOSIS
ENSZWYP00000021500.1RIBULOKINASE
ENSZWYP00000021501.1
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