About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original description

(Southward et al., 1991  Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000021502.1MYOSIN LIGHT CHAIN 1, 3
ENSZWYP00000021503.1GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
ENSZWYP00000021504.1DELTEX-RELATED
ENSZWYP00000021505.1DESUMOYLATING ISOPEPTIDASE
ENSZWYP00000021506.1
ENSZWYP00000021507.1INHIBITOR OF APOPTOSIS
ENSZWYP00000021508.1JUN TRANSCRIPTION FACTOR-RELATED
ENSZWYP00000021509.1
ENSZWYP00000021510.1MYOSIN LIGHT CHAIN 1, 3
ENSZWYP00000021511.1AMINOMETHYLTRANSFERASE
ENSZWYP00000021512.1DELTEX-RELATED
ENSZWYP00000021513.1GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
ENSZWYP00000021514.1
ENSZWYP00000021515.1RCG26366
ENSZWYP00000021516.1EG:80H7.2 PROTEIN
ENSZWYP00000021517.1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
ENSZWYP00000021518.1
ENSZWYP00000021519.1PROTEIN TAG-278-RELATED
ENSZWYP00000021520.1EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1
ENSZWYP00000021521.1REVERSE TRANSCRIPTASE
ENSZWYP00000021522.1
ENSZWYP00000021523.1TENASCIN
ENSZWYP00000021524.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
ENSZWYP00000021525.1
ENSZWYP00000021526.1
ENSZWYP00000021527.1EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1
ENSZWYP00000021528.1TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
ENSZWYP00000021529.1N-MYC DOWNSTREAM REGULATED
ENSZWYP00000021530.1KPL2-RELATED
ENSZWYP00000021531.1DYNACTIN 1-RELATED MICROTUBULE-BINDING
ENSZWYP00000021532.1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
ENSZWYP00000021533.1TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
ENSZWYP00000021534.1UNCHARACTERIZED
ENSZWYP00000021535.1
ENSZWYP00000021536.1
ENSZWYP00000021537.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000021538.1N-MYC DOWNSTREAM REGULATED
ENSZWYP00000021539.1KPL2-RELATED
ENSZWYP00000021540.1
ENSZWYP00000021541.1COILED-COIL DOMAIN-CONTAINING PROTEIN 40
ENSZWYP00000021542.1RING FINGER DOMAIN-CONTAINING
ENSZWYP00000021543.1IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
ENSZWYP00000021544.1NUCLEAR HORMONE RECEPTOR HR3-RELATED
ENSZWYP00000021545.1UNCHARACTERIZED
ENSZWYP00000021546.1TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE
ENSZWYP00000021547.1ADP-RIBOSYLGLYCOHYDROLASE
ENSZWYP00000021548.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000021549.1RING FINGER DOMAIN-CONTAINING
ENSZWYP00000021550.1ATP-DEPENDENT RNA HELICASE DBP3
ENSZWYP00000021551.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
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